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This paper attempts to integrate concepts of a collaborative commerce and inter-organizational relationship to build a framework for influencing factors of e-Taiwan collaborative commerce partnership and empirically explore it. The importance for five dimensions of the Research Model based on seven top representatives of interviewed six Taiwanese companies engaged in E-Taiwan is summarized. Statistical analysis is used to decide which factors are vital for the success in three phases of partnership in e-Taiwan. Data are collected through a survey of organizations that are actively involved in the planning or operation of E-Taiwan collaborative commerce. The result has been shown the influencing factors are not the same in three phases of partnership in this collaborative commerce. It implies that to manage a collaborative commerce must have different strategies to select, develop, and maintain participants.